Image Analysis

Citation	Link	Keywords
Stringer, C., Wang, T., Michaelos, M. et al. Cellpose: a generalist algorithm for cellular segmentation. Nat Methods 18, 100–106 (2021).	https://www.nature.com/articles/s41592-020-01018-x	Segmentation, Tools, Deep Learning
Ershov, D., Phan, MS., Pylvänäinen, J.W. et al. TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines. Nat Methods 19, 829–832 (2022).	https://www.nature.com/articles/s41592-022-01507-1	Tracking, Tools
Archit, A., Freckmann, L., Nair, S. et al. Segment Anything for Microscopy. Nat Methods 22, 579–591 (2025).	https://www.nature.com/articles/s41592-024-02580-4	Segmentation, Tools, Deep Learning

van Ooijen, Hanna et al. 

A thermoplastic chip for 2D and 3D correlative assays combining screening and high-resolution imaging of immune cell responses.

Cell Reports Methods, Volume 5, Issue 1, 100965 https://www.cell.com/cell-reports-methods/fulltext/S2667-2375(25)00001-3

imaging, microwell, correlative imaging, high-resolution, tumor microenvironment, natural killer cell