Deep learning supported image analysis of angle-resolved scattered light images of bacteria in microfluidic droplets

09/09/2022 IBSB 2022

Arjun Sarkar, Carl-Magnus Svensson, Martina Graf, Anne-Sophie Munser, Miriam A. Rosenbaum, Marc Thilo Figge


JIPipe: Designing automated image analysis
pipelines without programming

08/09/2022 IbSB 2022

Ruman Gerst, Zoltan Cseresnyes, Marc Thilo Figge


Mcat: a multispectral cluster analysis toolkit for deep learning-based segmentation and clinical biomarker quantification of MSOT data

08/09/2022 IbSB 2022

B. Hoffmann, R. Gerst, Z. Cseresnyés, W. Foo, O. Sommerfeld, A. T. Press, M. Bauer, M. T. Figge


Modeling Candida albicans Complement Regulator Pra1

15/05/2022 Molecular Mechanisms of Host-pathogen Interactions and Virulence in Human Fungal Pathogens 2022

Paul Rudolph, Alexander Tille, Sandra Timme, Peter F. Zipfel, Marc Thilo Figge


Automated Characterization of Neutrophil Activation Phenotypes for Human Candida Bloodstream Infections

30/11/2021 BioImage Informatics 2021 (The Institut Pasteur, Paris, on-line)

Belyaev I., Marolda A., Praetorius J.-P., Medyukhina A., Hünniger K., Kurzai O., Figge M. T.


Automatic segmentation and classification of fungal-infected tissue using Deep Learning


J.-P. Praetorius, F. Hoffmann, C.M. Svensson, O. Kurzai, F.v. Eggeling, M.T. Figge


3D-HyTracer: Quantitative hyphal growth analysis through hyphae-to-graph transormation


J.-P. Praetorius, S. Hoffmann, M. Zerdani, C. Saffer, R.A. Roman, A. S. Mosig, M. Gresnigt, B. Hube, M.T. Figge


Machine learning supported image analysis of microfluidic droplets

28/10/2021 HKI Evaluation

C.M. Svensson, A. Sarkar, S. Hengoju, M. Agler-Rosenbaum, M.T. Figge