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IA-48

Automated Image Analysis of the Interaction between Phagocytes and Aspergillus fumigatus during infection

01/01/2011

F. Mech, A. Thywißen, R. Guthke, A.A. Brakhage, M. T. Figge

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IbSB-5

Quantitative description of fungal morphology by automated image analysis

01/01/2011

F. Mech, D. Wilson, T. Lehnert, M. T. Figge

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Posters ASB-82458 Deep learning supported image analysis of angle-resolved scattered light images of bacteria in microfluidic droplets
09/09/2022
ASB-82457 A spatio-temporal model for simulating hyphal growth of filamentous fungal species
08/09/2022
IA-68 JIPipe: Designing automated image analysis
pipelines without programming
08/09/2022
IbSB-13 Mcat: a multispectral cluster analysis toolkit for deep learning-based segmentation and clinical biomarker quantification of MSOT data
08/09/2022
M-40 Modeling Candida albicans Complement Regulator Pra1
15/05/2022
IA-67 Automated Characterization of Neutrophil Activation Phenotypes for Human Candida Bloodstream Infections
30/11/2021
IA-62 AMIT: A high performance segmentation and tracking framework for migration and confrontation assays
01/11/2021
IA-63 Automatic segmentation and classification of fungal-infected tissue using Deep Learning
01/11/2021
IA-61 3D-HyTracer: Quantitative hyphal growth analysis through hyphae-to-graph transormation
01/11/2021
IA-66 Machine learning supported image analysis of microfluidic droplets
28/10/2021
IA-65 Algorithm for confrontation assay quantification (ACAQ): Label-free image analysis supported by Hessian filtering
28/10/2021
IA-64 From raw images to abstract surface models: deconvolution, DeConvTest and DynSPHARM
28/10/2021
IA-58 MISA++: A standardized interface for automated bioimage analysis
28/10/2021
IA-57 JIPipe: Designing automated image analysis pipelines without programming
28/10/2021
M-36 Virtual whole-blood infection assays
28/10/2021
IbSB-12 Causal inference analysis of live cell imaged confrontation
assays with agent-based modelling
28/10/2021
IbSB-10 Research Group Applied Systems Biology
01/10/2021
IbSB-9 Leibniz ScienceCampus InfectoOptics - Combating infectious diseases with advanced optical methods
01/10/2021
IA-60 Mcat: A toolkit for deep learning-based segmentation and automated analysis of MSOT image data
01/10/2021
IA-59 Methods for quantitative analysis of bone degradation and remodeling from μCT images
01/10/2021
M-37 Studies on virtual whole-blood infection assays
01/10/2021
M-39 Design of an optimal COVID-19 surveillance protocol for child care facilities using an infection spread model
01/10/2021
M-35 Comparative simulations of fungal infection dynamics in the human and murine lung
01/10/2021
M-38 DynaCoSys: Dynamic model of the complement system to understand pathogen immune evasion
01/10/2021
M-34 Hybrid agent-based modeling framework to simulate A. fumigatus infection scenario in the lung
01/10/2021
IA-56 JIPipe: Designing automated image analysis pipelines without programming
22/07/2021
IbSB-11 Virtual phagocytosis assays reveal strain‐specific differences in the microscopic parameters of the interaction between alveolar macrophages and two A. fumigatus strains
08/10/2020
IA-54 MSOT cluster analysis toolkit to objectively assess pharmacokinetics and biodistribution of clinical biomarkers
01/09/2020
IA-52 MISA++: a standardized interface for automatedhigh-performance big volume image analysis
04/03/2020
IA-55 Quantitative image analysis of label-free cells
01/01/2020
IbSB-8 Virtual phagocytosis assays reveal strain‐specific differences in the microscopic parameters of the interaction between alveolar macrophages and two A. fumigatus strains
26/09/2019
IA-53 Morphokinetic analysis of live-cell imaging data
26/09/2019
M-31 Simulation of virtual phagocytosis assays with alveolar macrophages and Aspergillus fumigatus conidia
01/09/2019
M-33 Quantification of the dynamics of fungal confrontation assays
01/09/2019
M-32 Quantification of factor H mediated self and non-self discrimination by mathematical modeling
01/09/2019
IA-51 Automated Analysis of Fungal-Infected Tissue using Deep Learning
01/09/2019
M-30 Verifying Hypotheses on Immune Evasion by Pathogens in Human Whole Blood by State-based Virtual Infection Models
01/05/2019
IA-50 DeconvTest: an in silico microscopy framework to evaluate the accuracy of deconvolution
01/02/2019
M-28 Quantitative Simulations Predict Treatment Strategies Against Fungal Infections in Virtual Neutropenic Patients Fungal Infections in Virtual Neutropenic Patients
08/11/2018
IA-49 B4: Cause - Effect Relationships in Confrontation Assays with C. glabrata and Human Neutrophils using Bayesian Networks
01/11/2018
M-29 Agent-based modeling of early Aspergillus fumigatus infection in mice
01/11/2018
M-27 Mathematical model of the factor H mediated self and non-self discrimination by the complement system
01/10/2018
IbSB-4 Simulation of virtual phagocytosis assays with alveolar marcrophages and Aspergillus fumigatus conidia reveals immune reaction rates
06/09/2018
IA-44 Towards an open high-performance platform for fully-automated analysis of whole organ light-sheet fluorescence microscopy data
06/09/2018
IA-37 DeconvTest: An in silico microscopy framework to evaluate the accuracy of deconvolution
01/09/2018
IA-40 ACAQ: a Fiji and R toolkit targeted for automated confrontation assay quantification
01/09/2018
IA-43 Measured and simulated 3D spatial distribution of plasma cells in the mouse bone marrow
01/09/2018
M-22 Virtual Infection Modeling of the Early Immune Response to Fungal Infections in Murine Whole Blood
01/09/2018
IA-42 Combining whole-blood infection assays with life-cell imaging to identify morphokinetic parameters for infection classification
01/09/2018
M-24 Mathematical model of the factor H mediated self and non-self discrimination by the complement system
01/08/2018
M-25 Agent-based modeling of early Aspergillus fumigatus infection in mice
01/07/2018
IA-33 Fast and efficient fully automated processing of lightsheet microscopy data to evaluate the glomerular number in kidneys
01/04/2018
IA-34 Automated image analysis methods for the quantification of cell damage and adherent fungal cells
01/03/2018
M-21 Predictive Virtual Infection Modeling of Fungal Immune Evasion in Human Whole Blood
01/03/2018
M-26 Agent-based modeling of early Aspergillus fumigatus infection in mice
01/02/2018
IA-41 Joint Intravital Microscopy and Imaging: a multi-institute collaborative platform to aid intravital microscopy
01/01/2018
IA-36 Cell tracking of Neutrophils in Phagocytosis Assays
01/01/2018
IA-35 Image Processing in Droplet Microfluidics
01/01/2018
IA-39 Quantitative analysis of intracellular communication from life cell imaging
01/01/2018
IA-47 Analysis of Dynamic Properties in Biological Systems from Image Data
01/01/2018
IA-32 Machine learning supported image analysis of microfluidic droplets: Using Random Forest classifiers and Bayesian inference for identification of experimental conditions
01/12/2017
IbSB-2 ICH SEHE WAS, WAS DU NICHT SIEHST: BILDANALYSE UND COMPUTERSIMULATIONEN FÜR DIE INFEKTIONSDIAGNOSTIK
01/11/2017
IA-38 Lang Nacht der Wissenschaften - Lichtblattfluorescencemikroscopie (LSFM)
01/11/2017
M-15 Predictions of antimicrobial treatment strategies based on in silico experiments of virtual neutropenic patients
16/10/2017
IA-27 Morphokinetic analysis of neutrophils from whole-blood infection assays
01/10/2017
M-19 Quantification of the innate immune function in whole-blood infection assays reveals pathogen-dependent immune defence of different sepsis phases
21/09/2017
M-20 Quantification of Innate Immune Function in Whole-blood Infection Assays
06/09/2017
M-13 Agent-based modeling of early Aspergillus fumigatus infection in mice
01/09/2017
IA-29 Automated Image Analysis of the Interaction between Lichtheimia spp. and Alveolar Macrophages
01/09/2017
IA-30 Multispectral optoacoustic tomography to assess liver and kidney function in sepsis by measuring dye clearance
01/09/2017
M-14 Predictive Virtual Infection Modeling of Pathogenic Immune Evasion in Human Whole-blood
01/09/2017
M-23 Quantitative virtual infection modeling in sepsis
01/08/2017
IA-25 Automated tracking and characterization of cell dynamics for classifier models
01/08/2017
M-12 Quantitative mathematical modelling of the alternative pathway of the complement system
01/05/2017
M-16 In silico Experiments of Fungal and Bacterial Infections in Virtual Neutropenic Patients suggest Optimal Treatment Strategies
20/03/2017
IA-45 Enhanced Detection of Unstained Cells in an Existing Segmentation and Tracking Framework
01/03/2017
IA-28 Migration and Interaction Tracking for Quantitative Analysis of Phagocyte‐Pathogen Confrontation Assays
01/03/2017
M-17 QUANTIM- Quantification of Innate Immune Function in Whole Blood Infection Assay
02/02/2017
IA-26 Automated tracking and characterization of cell dynamics for classifier models
01/02/2017
IbSB-6 B4: Image data analysis and agent-based modelling of the spatio-temporal interaction between immune cells and human-pathogenic fungi
01/01/2017
IA-31 In vivo quantification of arthritis-induced alterations of murine bones based on PET/CT image data
01/01/2017
IA-20 Enhanced Detection of Unstained Cells in an Existing Segmentation and Tracking Framework
01/12/2016
IA-18 Track-based analysis of cell migration
01/12/2016
M-18 Dimensionality of motion and binding valency govern receptor-ligand kinetics as revealed by agent-based modelling
05/10/2016
M-11 Investigating Candida albicans resistance in whole-blood assays by virtual infection models using parallelized parameter estimation
01/10/2016
IA-15 Morphological restoration: A fast alternative to deconvolution of cells in 3D images
01/10/2016
IA-19 Enhanced Detection of Unstained Cells in an Existing Segmentation and Tracking Framework
01/09/2016
IA-24 Striped Illumination Microscopy with an enhanced iterative processing algorithm provides a novel high-resolution deep-tissue imaging technique
01/09/2016
IA-17 Automated enumeration of circulating tumor cells: machine learning techniques and interobserver variability
01/09/2016
IA-16 Combined [18F]-Fluoride Imaging in Experimental Arthritis
01/09/2016
IA-23 Image Segmentation Methods for the Quantification of C. albicans cells in Fluorescence Images
01/05/2016
M-10 Virtual infection model for Aspergillus fumigatus in human alveoli
01/04/2016
IA-22 Image Segmentation Methods for the Quantification of C. albicans cells in Fluorescence Images
01/04/2016
IA-21 AMIT: a novel algorithm for migration and interaction tracking for high-throughput analysis of phagocytosis assays
01/03/2016
IbSB-3 Angewandte Systembiologie
01/01/2016
IA-13 Automated Characterization of Cell Tracks: Step forward
01/11/2015
M-9 Simulation of Immune Cell Deficiencies in a State-based Virtual Infectin Model of Human Whole-blood Assays for Candida albicans
17/09/2015
M-8 Investigation of spatial dynamics of fungal-host-interactions of Candida albicans and innate immune cells
17/09/2015
IA-14 Automated Image Analysis for Quantifying Fungus-host Interactions
01/09/2015
M-7 Hybrid agent-based modeling of human alveoli reveals chemokine properties in Aspergillus fumigatus infection
01/04/2015
M-5 Agent-based Modeling on Cellular and Molecular Scales
16/10/2014
M-6 Virtual Infection Models of Candida albicans in Whole Blood
16/10/2014
IbSB-1 Epithelial Invasion Outcompetes Hypha Development During Candida albicans Infection as Revealed by an Image-based Systems Biology Approach
25/09/2014
M-4 A hybrid agent-based modeling approach of Aspergillus fumigatus infection in the human alveolus
09/09/2014
IA-7 Automated Detection of Circulating Tumour Cells
01/09/2014
IA-10 Automated Image Analysis of Microfluidic Droplets
01/09/2014
IA-8 Automated image analysis of the host-pathogen interaction between immune cells and human-pathogenic fungi
01/09/2014
IA-5 Image analysis of immune cell interactions from two-photon microscopy dat
01/09/2014
IA-6 In vivo Quantification of Arthritis Severity in a Murine Model by µCT Imaging
01/09/2014
IA-11 Quantitative image analysis of cell colocalization in murine bone marrow
01/09/2014
IA-12 Automated characterization of cell tracks based on local migration behavior
01/06/2014
IA-9 Comparative Study of Phagocytosis-assays for Lichtheimia Species by Automated Analysis of Fluorescence Microscopy Images
01/03/2014
IA-4 Automated characterization of cell tracks based on local migration behavior
01/09/2013
M-3 Virtual infection model of the immune response against Candida albicans in human whole-blood assay
01/09/2013
IA-3 Quantification of Arthritis Progression From CT Images
01/09/2013
IA-2 Automated Detection of Circulating Tumour Cells
01/09/2013
IA-46 Image Processing in Droplet Microfluidics
01/07/2013
M-2 Parameter Estimation by Simulated Annealing for Models of Whole-Blood Infection Assays with Candida Albicans
21/09/2012
M-1 A Spatio-Temporal Modeling Framework to Simulate Host-Pathogen Interaction
01/09/2012
IA-1 Single Cell Track Analysis of Two Photon Microscopy on Th17 Cells in the Gut
01/09/2012
IA-48 Automated Image Analysis of the Interaction between Phagocytes and Aspergillus fumigatus during infection
01/01/2011
IbSB-5 Quantitative description of fungal morphology by automated image analysis
01/01/2011
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