2025-09-15
Selective activation of dynamics in kinetically frozen supramolecular polymer bottlebrush assemblies
Hans F. Ulrich, Tobias Klein, Ziliang Zhao, Zoltán Cseresnyés, Pablo Carravilla, Ruman Gerst, Alina Kasberg, Frederic P. Scharfenberg, Marc Thilo Figge, Christian Eggeling, Johannes C. Brendel
Small
2025-03-01
Intuitive workflows for automated image analysis - JIPipe as an open-source tool for FAIR image analysis.
Ruman Gerst, Zoltán Cseresnyés, Figge#
Microscopy and Analysis
2025-02-19
Intuitive Abläufe für die automatisierte Bildanalyse. JIPipe als quelloffene Softwarelösung für FAIRe Bildanalyse
Gerst R, Cseresnyés Z, Figge MT#
Wiley Analytical Science
2024-08-07
NFDI4BIOIMAGE – National research data infrastructure for microscopy and bioimage analysis
Moore J#, Kunis S, Grüning B, Blank-Burian M, Mallm JP, Stöter T, Zuschratter W, Figge MT, Kreshuk A, Tischer C, Haase R, Zobel T, Bauer P, Svensson CM, Gerst R, Hanne J, Schmidt C, Becker MM, Bocklitz T, Bumberger J, Chalopin C, Chen J, Czodrowski P, Dickscheid T, Fortmann- Grote C, Huisken J, Lohmann J, Schauss A, Baumann M, Beretta C, Burel JM, Heuveline C, Kuner R, Kuner T, Landwehr M, Leibfried A, Nitschke R, Mittal D, von Suchodoletz D, Valencia- Schneider M, Zentis P, Brilhaus D, Hartley M, Hülsmann B, Dunker S, Keppler A, Mathur A, Meesters C, Möbius W, Nahnsen S, Pfander C, Rehwald S, Serrano-Solano B, Vilardell Scholten L, Vogl R, Becks L, Ferrando-May E*#, Weidtkamp-Peters S*#
Zenodo
2024-02-20
The global RNA–RNA interactome of Klebsiella pneumoniae unveils a small RNA regulator of cell division
Ruhland E, Siemers M*, Gerst R*, Späth F, Vogt LN, Figge MT, Papenfort K, Fröhlich KS#
Proc Natl Acad Sci
2023-05-27
Evaluation of reproducible cryogel preparation based on automated image analysis using deep learning
Behrendt F*, Cseresnyés Z*, Gerst R, Gottschaldt M, Figge MT#, Schubert US#
J Biomed Mater Res A
2023-01-10
JIPipe: Visual batch processing for ImageJ
Gerst R*, Cseresnyés Z*, Figge MT#
Nature Methods
2022-08-05
Toxin-producing endosymbionts shield pathogenic fungus against micropredators
Richter I, Radosa S, Cseresnyés Z, Ferling I, Büttner H, Niehs SP, Gerst R, Scherlach K, Figge MT, Hillmann F, Hertweck C
mBio
2022-06-22
Spatial quantification of clinical biomarker pharmacokinetics through deep learning-based segmentation and signal-oriented analysis of MSOT data
Hoffmann B*, Gerst R*, Cseresnyés Z, Foo W, Sommerfeld O, Press AT, Bauer M, Figge MT
Photoacoustics
2021-09-09
Bacterial endosymbionts protect beneficial soil fungus from nematode attack
Hannah Büttner*, Sarah P Niehs*, Koen Vandelannoote, Zoltán Cseresnyés, Benjamin Dose, Ingrid Richter, Ruman Gerst, Marc Thilo Figge, Timothy P Stinear , Sacha J Pidot, Christian Hertweck#
PNAS
2020-01-16
MISA++: A standardized interface for automated bioimage analysis
Ruman Gerst*, Anna Medyukhina, Marc Thilo Figge#
SoftwareX