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A. fumigatus infection in virtual alveolus
In this project, a virtual infection with A. fumigatus in human or murine alveolus is simulated. The corresponding model considers…
Hyphal growth simulation
In this project, the growth of fungal hyphae is modeled. As a parameterized approach, different hyphal structures can be learned,…
JIPipe
ImageJ is a powerful tool for image analysis that is easy to learn and can be extended with hundreds of…
KITE
KITE (Kindergarten COVID-19 Test scenario evaluator) is a state-based model for simulating the spread of COID-19 in kindergartens. This software…
ODE/SBM Parameter Estimator
The ODE/SBM parameter estimator is a framework for simulating, estimating, and screening ordinary differential equations (ODEs) or state-based models (SBMs)…
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3D-HyTracer
3D-HyTracer is an image analysis tool for automated tracing of fungal hyphae. It creates a low-memory and easily accessible spatial…
A. fumigatus infection in virtual alveolus
In this project, a virtual infection with A. fumigatus in human or murine alveolus is simulated. The corresponding model considers…
ABM
The agent-based modelling framework is a generalized framework that is able to capture spatio-temporal dynamics of processes in host-pathogen interactions…
ACAQ
ACAQ is an ImageJ macro designed for the analysis of phagocytosis assays. ACAQ was gradually developed into a full-blown image…
AMIT
The algorithm for migration and interaction tracking (AMIT) approach enables high-throughput segmentation for label-free cells, which does not rely on…
Aspergillus fumigatus – macrophage interaction
The first line of defence against the airborne human-pathogenic fungus A. fumigatus are the resident immune cells in the human…
Bacterial Co-infection model
Co-infection of wounds with more than one pathogen are frequently observed in the clinical setting and are often more difficult…
BoneStruct
Early diagnosis and evaluation of treatment efficacy are crucial in managing rheumatoid arthritis. In this regard, animal models can help…