logo logo
Menu
  • Home
  • Projects
  • Posters
  • Team
  • Publication data
  • Visit our GitHub
 /   /  Comparative simulations of fungal infection dynamics in the human and murine lung

Comparative simulations of fungal infection dynamics in the human and murine lung

C. Saffer, S. Timme, M. T. Figge
Modeling M-35
01/10/2021
Poster wall 17

  • Open full screen
  • Poster archive printout

Related projects

A. fumigatus infection in virtual alveolus
ABM
  • DynaCoSys: Dynamic model of the complement system to understand pathogen immune evasion
  • Design of an optimal COVID-19 surveillance protocol for child care facilities using an infection spread model

Search

Posters ASB-82458 Deep learning supported image analysis of angle-resolved scattered light images of bacteria in microfluidic droplets
09/09/2022
ASB-82457 A spatio-temporal model for simulating hyphal growth of filamentous fungal species
08/09/2022
IA-68 JIPipe: Designing automated image analysis
pipelines without programming
08/09/2022
IbSB-13 Mcat: a multispectral cluster analysis toolkit for deep learning-based segmentation and clinical biomarker quantification of MSOT data
08/09/2022
M-40 Modeling Candida albicans Complement Regulator Pra1
15/05/2022
IA-67 Automated Characterization of Neutrophil Activation Phenotypes for Human Candida Bloodstream Infections
30/11/2021
IA-62 AMIT: A high performance segmentation and tracking framework for migration and confrontation assays
01/11/2021
IA-63 Automatic segmentation and classification of fungal-infected tissue using Deep Learning
01/11/2021
IA-61 3D-HyTracer: Quantitative hyphal growth analysis through hyphae-to-graph transormation
01/11/2021
IA-66 Machine learning supported image analysis of microfluidic droplets
28/10/2021
IA-65 Algorithm for confrontation assay quantification (ACAQ): Label-free image analysis supported by Hessian filtering
28/10/2021
IA-64 From raw images to abstract surface models: deconvolution, DeConvTest and DynSPHARM
28/10/2021
IA-58 MISA++: A standardized interface for automated bioimage analysis
28/10/2021
IA-57 JIPipe: Designing automated image analysis pipelines without programming
28/10/2021
M-36 Virtual whole-blood infection assays
28/10/2021
IbSB-12 Causal inference analysis of live cell imaged confrontation
assays with agent-based modelling
28/10/2021
IbSB-10 Research Group Applied Systems Biology
01/10/2021
IbSB-9 Leibniz ScienceCampus InfectoOptics - Combating infectious diseases with advanced optical methods
01/10/2021
IA-60 Mcat: A toolkit for deep learning-based segmentation and automated analysis of MSOT image data
01/10/2021
IA-59 Methods for quantitative analysis of bone degradation and remodeling from μCT images
01/10/2021
M-37 Studies on virtual whole-blood infection assays
01/10/2021
M-39 Design of an optimal COVID-19 surveillance protocol for child care facilities using an infection spread model
01/10/2021
M-35 Comparative simulations of fungal infection dynamics in the human and murine lung
01/10/2021
M-38 DynaCoSys: Dynamic model of the complement system to understand pathogen immune evasion
01/10/2021
M-34 Hybrid agent-based modeling framework to simulate A. fumigatus infection scenario in the lung
01/10/2021
IA-56 JIPipe: Designing automated image analysis pipelines without programming
22/07/2021
IbSB-11 Virtual phagocytosis assays reveal strain‐specific differences in the microscopic parameters of the interaction between alveolar macrophages and two A. fumigatus strains
08/10/2020
IA-54 MSOT cluster analysis toolkit to objectively assess pharmacokinetics and biodistribution of clinical biomarkers
01/09/2020
IA-52 MISA++: a standardized interface for automatedhigh-performance big volume image analysis
04/03/2020
IA-55 Quantitative image analysis of label-free cells
01/01/2020
IbSB-8 Virtual phagocytosis assays reveal strain‐specific differences in the microscopic parameters of the interaction between alveolar macrophages and two A. fumigatus strains
26/09/2019
IA-53 Morphokinetic analysis of live-cell imaging data
26/09/2019
M-31 Simulation of virtual phagocytosis assays with alveolar macrophages and Aspergillus fumigatus conidia
01/09/2019
M-33 Quantification of the dynamics of fungal confrontation assays
01/09/2019
M-32 Quantification of factor H mediated self and non-self discrimination by mathematical modeling
01/09/2019
IA-51 Automated Analysis of Fungal-Infected Tissue using Deep Learning
01/09/2019
M-30 Verifying Hypotheses on Immune Evasion by Pathogens in Human Whole Blood by State-based Virtual Infection Models
01/05/2019
IA-50 DeconvTest: an in silico microscopy framework to evaluate the accuracy of deconvolution
01/02/2019
M-28 Quantitative Simulations Predict Treatment Strategies Against Fungal Infections in Virtual Neutropenic Patients Fungal Infections in Virtual Neutropenic Patients
08/11/2018
IA-49 B4: Cause - Effect Relationships in Confrontation Assays with C. glabrata and Human Neutrophils using Bayesian Networks
01/11/2018
M-29 Agent-based modeling of early Aspergillus fumigatus infection in mice
01/11/2018
M-27 Mathematical model of the factor H mediated self and non-self discrimination by the complement system
01/10/2018
IbSB-4 Simulation of virtual phagocytosis assays with alveolar marcrophages and Aspergillus fumigatus conidia reveals immune reaction rates
06/09/2018
IA-44 Towards an open high-performance platform for fully-automated analysis of whole organ light-sheet fluorescence microscopy data
06/09/2018
IA-37 DeconvTest: An in silico microscopy framework to evaluate the accuracy of deconvolution
01/09/2018
IA-40 ACAQ: a Fiji and R toolkit targeted for automated confrontation assay quantification
01/09/2018
IA-43 Measured and simulated 3D spatial distribution of plasma cells in the mouse bone marrow
01/09/2018
M-22 Virtual Infection Modeling of the Early Immune Response to Fungal Infections in Murine Whole Blood
01/09/2018
IA-42 Combining whole-blood infection assays with life-cell imaging to identify morphokinetic parameters for infection classification
01/09/2018
M-24 Mathematical model of the factor H mediated self and non-self discrimination by the complement system
01/08/2018
M-25 Agent-based modeling of early Aspergillus fumigatus infection in mice
01/07/2018
IA-33 Fast and efficient fully automated processing of lightsheet microscopy data to evaluate the glomerular number in kidneys
01/04/2018
IA-34 Automated image analysis methods for the quantification of cell damage and adherent fungal cells
01/03/2018
M-21 Predictive Virtual Infection Modeling of Fungal Immune Evasion in Human Whole Blood
01/03/2018
M-26 Agent-based modeling of early Aspergillus fumigatus infection in mice
01/02/2018
IA-41 Joint Intravital Microscopy and Imaging: a multi-institute collaborative platform to aid intravital microscopy
01/01/2018
IA-36 Cell tracking of Neutrophils in Phagocytosis Assays
01/01/2018
IA-35 Image Processing in Droplet Microfluidics
01/01/2018
IA-39 Quantitative analysis of intracellular communication from life cell imaging
01/01/2018
IA-47 Analysis of Dynamic Properties in Biological Systems from Image Data
01/01/2018
IA-32 Machine learning supported image analysis of microfluidic droplets: Using Random Forest classifiers and Bayesian inference for identification of experimental conditions
01/12/2017
IbSB-2 ICH SEHE WAS, WAS DU NICHT SIEHST: BILDANALYSE UND COMPUTERSIMULATIONEN FÜR DIE INFEKTIONSDIAGNOSTIK
01/11/2017
IA-38 Lang Nacht der Wissenschaften - Lichtblattfluorescencemikroscopie (LSFM)
01/11/2017
M-15 Predictions of antimicrobial treatment strategies based on in silico experiments of virtual neutropenic patients
16/10/2017
IA-27 Morphokinetic analysis of neutrophils from whole-blood infection assays
01/10/2017
M-19 Quantification of the innate immune function in whole-blood infection assays reveals pathogen-dependent immune defence of different sepsis phases
21/09/2017
M-20 Quantification of Innate Immune Function in Whole-blood Infection Assays
06/09/2017
M-13 Agent-based modeling of early Aspergillus fumigatus infection in mice
01/09/2017
IA-29 Automated Image Analysis of the Interaction between Lichtheimia spp. and Alveolar Macrophages
01/09/2017
IA-30 Multispectral optoacoustic tomography to assess liver and kidney function in sepsis by measuring dye clearance
01/09/2017
M-14 Predictive Virtual Infection Modeling of Pathogenic Immune Evasion in Human Whole-blood
01/09/2017
M-23 Quantitative virtual infection modeling in sepsis
01/08/2017
IA-25 Automated tracking and characterization of cell dynamics for classifier models
01/08/2017
M-12 Quantitative mathematical modelling of the alternative pathway of the complement system
01/05/2017
M-16 In silico Experiments of Fungal and Bacterial Infections in Virtual Neutropenic Patients suggest Optimal Treatment Strategies
20/03/2017
IA-45 Enhanced Detection of Unstained Cells in an Existing Segmentation and Tracking Framework
01/03/2017
IA-28 Migration and Interaction Tracking for Quantitative Analysis of Phagocyte‐Pathogen Confrontation Assays
01/03/2017
M-17 QUANTIM- Quantification of Innate Immune Function in Whole Blood Infection Assay
02/02/2017
IA-26 Automated tracking and characterization of cell dynamics for classifier models
01/02/2017
IbSB-6 B4: Image data analysis and agent-based modelling of the spatio-temporal interaction between immune cells and human-pathogenic fungi
01/01/2017
IA-31 In vivo quantification of arthritis-induced alterations of murine bones based on PET/CT image data
01/01/2017
IA-20 Enhanced Detection of Unstained Cells in an Existing Segmentation and Tracking Framework
01/12/2016
IA-18 Track-based analysis of cell migration
01/12/2016
M-18 Dimensionality of motion and binding valency govern receptor-ligand kinetics as revealed by agent-based modelling
05/10/2016
M-11 Investigating Candida albicans resistance in whole-blood assays by virtual infection models using parallelized parameter estimation
01/10/2016
IA-15 Morphological restoration: A fast alternative to deconvolution of cells in 3D images
01/10/2016
IA-19 Enhanced Detection of Unstained Cells in an Existing Segmentation and Tracking Framework
01/09/2016
IA-24 Striped Illumination Microscopy with an enhanced iterative processing algorithm provides a novel high-resolution deep-tissue imaging technique
01/09/2016
IA-17 Automated enumeration of circulating tumor cells: machine learning techniques and interobserver variability
01/09/2016
IA-16 Combined [18F]-Fluoride Imaging in Experimental Arthritis
01/09/2016
IA-23 Image Segmentation Methods for the Quantification of C. albicans cells in Fluorescence Images
01/05/2016
M-10 Virtual infection model for Aspergillus fumigatus in human alveoli
01/04/2016
IA-22 Image Segmentation Methods for the Quantification of C. albicans cells in Fluorescence Images
01/04/2016
IA-21 AMIT: a novel algorithm for migration and interaction tracking for high-throughput analysis of phagocytosis assays
01/03/2016
IbSB-3 Angewandte Systembiologie
01/01/2016
IA-13 Automated Characterization of Cell Tracks: Step forward
01/11/2015
M-9 Simulation of Immune Cell Deficiencies in a State-based Virtual Infectin Model of Human Whole-blood Assays for Candida albicans
17/09/2015
M-8 Investigation of spatial dynamics of fungal-host-interactions of Candida albicans and innate immune cells
17/09/2015
IA-14 Automated Image Analysis for Quantifying Fungus-host Interactions
01/09/2015
M-7 Hybrid agent-based modeling of human alveoli reveals chemokine properties in Aspergillus fumigatus infection
01/04/2015
M-5 Agent-based Modeling on Cellular and Molecular Scales
16/10/2014
M-6 Virtual Infection Models of Candida albicans in Whole Blood
16/10/2014
IbSB-1 Epithelial Invasion Outcompetes Hypha Development During Candida albicans Infection as Revealed by an Image-based Systems Biology Approach
25/09/2014
M-4 A hybrid agent-based modeling approach of Aspergillus fumigatus infection in the human alveolus
09/09/2014
IA-7 Automated Detection of Circulating Tumour Cells
01/09/2014
IA-10 Automated Image Analysis of Microfluidic Droplets
01/09/2014
IA-8 Automated image analysis of the host-pathogen interaction between immune cells and human-pathogenic fungi
01/09/2014
IA-5 Image analysis of immune cell interactions from two-photon microscopy dat
01/09/2014
IA-6 In vivo Quantification of Arthritis Severity in a Murine Model by µCT Imaging
01/09/2014
IA-11 Quantitative image analysis of cell colocalization in murine bone marrow
01/09/2014
IA-12 Automated characterization of cell tracks based on local migration behavior
01/06/2014
IA-9 Comparative Study of Phagocytosis-assays for Lichtheimia Species by Automated Analysis of Fluorescence Microscopy Images
01/03/2014
IA-4 Automated characterization of cell tracks based on local migration behavior
01/09/2013
M-3 Virtual infection model of the immune response against Candida albicans in human whole-blood assay
01/09/2013
IA-3 Quantification of Arthritis Progression From CT Images
01/09/2013
IA-2 Automated Detection of Circulating Tumour Cells
01/09/2013
IA-46 Image Processing in Droplet Microfluidics
01/07/2013
M-2 Parameter Estimation by Simulated Annealing for Models of Whole-Blood Infection Assays with Candida Albicans
21/09/2012
M-1 A Spatio-Temporal Modeling Framework to Simulate Host-Pathogen Interaction
01/09/2012
IA-1 Single Cell Track Analysis of Two Photon Microscopy on Th17 Cells in the Gut
01/09/2012
IA-48 Automated Image Analysis of the Interaction between Phagocytes and Aspergillus fumigatus during infection
01/01/2011
IbSB-5 Quantitative description of fungal morphology by automated image analysis
01/01/2011
Twitter @AppSysBio
© 2023 - Applied Systems Biology – HKI Jena