Featured
A. fumigatus infection in virtual alveolus
In this project, a virtual infection with A. fumigatus in human or murine alveolus is simulated. The corresponding model considers…
Hyphal growth simulation
In this project, the growth of fungal hyphae is modeled. As a parameterized approach, different hyphal structures can be learned,…
JIPipe
ImageJ is a powerful tool for image analysis that is easy to learn and can be extended with hundreds of…
KITE
KITE (Kindergarten COVID-19 Test scenario evaluator) is a state-based model for simulating the spread of COID-19 in kindergartens. This software…
ODE/SBM Parameter Estimator
The ODE/SBM parameter estimator is a framework for simulating, estimating, and screening ordinary differential equations (ODEs) or state-based models (SBMs)…
All projects
CellRain
CellRain is a C++ modelling framework for Monte-Carlo Simulations on microscopy images. It can be applied: to estimate microscopic parameters,…
Complement immune evasion of Candida albicans
The pH-regulated antigen 1 (Pra1) is a hierarchical complement inhibitor that is secreted by the fugal pathogen Candida albicans and…
Confrontation assay model
In this project a virtual confrontation assay of polymorphonuclear neutrophils (PMN) and Candida glabrata cell cluster is modelled. Bases on…
DeconvTest
For many existing deconvolution methods, it is challenging to choose the method and its parameters most appropriate for particular image…
Droplet analysis
Microfluidic droplet handling is an ultra-high throughput technique that allows for encapsulation of single microbes in isolated compartments to, for…
DynaCoSys
The DynaCoSys model combines respectively partial and ordinary differential equations for molecular concentrations in the fluid and on the surface,respectively.…
DynSPHARM
Spherical harmonics (SPHARM) expand a shape function on a sphere using a set of orthogonal spherical functions. This allows the…
Evolutionary Game Theory model
In evolutionary game theory a population of individuals, here A. fumigatus, is simulated. Under the pressure of the immune system…