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A. fumigatus infection in virtual alveolus
In this project, a virtual infection with A. fumigatus in human or murine alveolus is simulated. The corresponding model considers…
Hyphal growth simulation
In this project, the growth of fungal hyphae is modeled. As a parameterized approach, different hyphal structures can be learned,…
JIPipe
ImageJ is a powerful tool for image analysis that is easy to learn and can be extended with hundreds of…
KITE
KITE (Kindergarten COVID-19 Test scenario evaluator) is a state-based model for simulating the spread of COID-19 in kindergartens. This software…
ODE/SBM Parameter Estimator
The ODE/SBM parameter estimator is a framework for simulating, estimating, and screening ordinary differential equations (ODEs) or state-based models (SBMs)…
All projects
Fully automated 3D glomeruli segmentation
Light-sheet fluorescence microscopy allows to capture whole organs in three spatial dimensions. Manual analysis of these big-volume data sets of…
FungIdent
FungIdent enables correlative microscopy-sprectroscopy guided analysis using advanced deep learning approaches to provide an online scan for the identification of…
Hyphal growth simulation
In this project, the growth of fungal hyphae is modeled. As a parameterized approach, different hyphal structures can be learned,…
JIPipe
ImageJ is a powerful tool for image analysis that is easy to learn and can be extended with hundreds of…
KITE
KITE (Kindergarten COVID-19 Test scenario evaluator) is a state-based model for simulating the spread of COID-19 in kindergartens. This software…
Mcat
Our MSOT cluster analysis toolkit enables the quantitative and automated analysis of multispectral optoacoustic tomography (MSOT) images. The pharmacokinetics of…
MISA++
Modern imaging techniques, such as light-sheet fluorescence microscopy, allow the capture of whole organs in three spatial dimensions. The analysis…
Model for antigen binding by B cell-derived receptors
In this study we investigate receptor–ligand binding in the context of antibody–antigen binding. We established a quantitative mapping between macroscopic…