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A. fumigatus infection in virtual alveolus
In this project, a virtual infection with A. fumigatus in human or murine alveolus is simulated. The corresponding model considers…
Hyphal growth simulation
In this project, the growth of fungal hyphae is modeled. As a parameterized approach, different hyphal structures can be learned,…
JIPipe
ImageJ is a powerful tool for image analysis that is easy to learn and can be extended with hundreds of…
KITE
KITE (Kindergarten COVID-19 Test scenario evaluator) is a state-based model for simulating the spread of COID-19 in kindergartens. This software…
ODE/SBM Parameter Estimator
The ODE/SBM parameter estimator is a framework for simulating, estimating, and screening ordinary differential equations (ODEs) or state-based models (SBMs)…
All projects
Modelling Factor H Mediated Self vs. Non-self Discrimination
By screening the Factor H concentration on cell surfaces three opsonization regimes are identified: (1) non-self recognition, (2) complement evasion…
Models for Candida albicans invasion and hyphal growth
The fungus Candida albicans often exists as commensal within the human oral mucosa, but also can cause severe infections mostly…
ODE/SBM Parameter Estimator
The ODE/SBM parameter estimator is a framework for simulating, estimating, and screening ordinary differential equations (ODEs) or state-based models (SBMs)…
Template Rotation Expectation Maximization
Template Rotation Expectation Maximization (TREM) is a machine learning algorithm for separating clusters of many identical objects of ellipsoid shape.…
Virtual whole blood infection assay
The virtual whole blood infection assay is used to simulate blood infection with different pathogens such as Candida albicans, Candida…